samplepeaksinput: Sample peaks list to be used as input to geneXtendeR

In Bohdan-Khomtchouk/geneXtendeR_keepme: Optimized Functional Annotation Of ChIP-seq Data

Description

A dataset containing the chromosome number, start and stop positions of ChIP-seq peaks along the Rattus norvegicus genome (rn6 assembly). A dataset like this may be used as input to the peaksInput() command, which will sort the dataset by chromosome number and start position.

Usage

data(samplepeaksinput)

Format

A data frame with 25089 rows and 3 variables:

chr

Chromosome number

start

Peak start position [in units of base pairs]

end

Peak end position [in units of base pairs]

Value

Demonstrates a sample peaks file used as input.

Examples

head(samplepeaksinput)
tail(samplepeaksinput)

Bohdan-Khomtchouk/geneXtendeR_keepme documentation built on June 3, 2019, 10:09 p.m.