cumlinePlot: Produces cumulative line plots.

Description Usage Arguments Value Examples

Description

Makes cumulative differential line plots showing the cumulative sums of the number of genes under peaks at consecutive upstream extension levels.

Usage

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cumlinePlot(organism, start, end, by)

Arguments

organism

Object name assigned from readGFF() command.

start

Lower bound of upstream extension.

end

Upper bound of upstream extension.

by

Interval between consecutive extensions.

Value

Creates cumulative differential line plots.

Examples

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library(rtracklayer)
rat <- readGFF("ftp://ftp.ensembl.org/pub/release-84/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_6.0.84.gtf.gz")
fpath <- system.file("extdata", "somepeaksfile.txt", package="geneXtendeR")
peaksInput(fpath)
cumlinePlot(rat, 1000, 3000, 100)

Bohdan-Khomtchouk/geneXtendeR_keepme documentation built on June 3, 2019, 10:09 p.m.