API for Burke-Lauenroth-Lab/rSFSW2
Simulation Framework for SOILWAT2

Global functions
EventDistribution Source code
ExtractClimateChangeScenarios Man page Source code
ExtractClimateWizard Man page Source code
ExtractData_Elevation Man page Source code
ExtractData_MeanMonthlyClimate Man page Source code
ExtractData_Soils Man page Source code
ExtractDayMet Man page
ExtractGriddedDailyWeatherFromDayMet_NorthAmerica_dbW Man page Source code
ExtractGriddedDailyWeatherFromDayMet_NorthAmerica_swWeather Man page Source code
ExtractGriddedDailyWeatherFromMaurer2002_NorthAmerica Man page Source code
ExtractGriddedDailyWeatherFromNRCan_10km_Canada Man page Source code
ExtractLookupWeatherFolder Source code
Grass_ANPP Man page Source code
GriddedDailyWeatherFromNCEPCFSR_Global Man page Source code
ISRICWISE_extract_SUIDs Man page Source code
ISRICWISE_get_prids Source code
NAto0 Source code
PRAGMA_settings1 Man page Source code
PRAGMA_settings2 Man page Source code
PrepareClimateScenarios Man page Source code
SFSW2_read_csv Man page Source code
SFSW2_read_inputfile Man page Source code
SMR_logic Man page Source code
SMR_names Man page Source code
SMRq_names Man page Source code
STMR Man page
STR_logic Man page Source code
STR_names Man page Source code
SWPtoVWC Man page Source code
SeedlingRootingDepth Man page Source code
Shrub_ANPP Man page Source code
SoilLayer_at_SoilDepth Man page Source code
TranspCoeffByVegType Man page Source code
VWCtoSWP Man page Source code
addHeaderToWhereClause Source code
add_dbOutput_index Source code
add_dbWork_index Source code
add_delta_to_PPT Man page Source code
add_granular_dbWork Man page Source code
add_layer_to_soil Man page Source code
add_status_dbWork Man page Source code
add_weights Source code
adjBiom_by_ppt Source code
adjust.WindspeedHeight Man page Source code
adjustLayer_byImp Source code
adjustLayersDepth Man page Source code
adjust_soils_todos Source code
align_with_target_grid Man page Source code
align_with_target_res Man page Source code
applyDelta_oneYear Source code
applyDeltas Man page Source code
applyDeltas2 Source code
applyPPTdelta_detailed Man page Source code
applyPPTdelta_simple Man page Source code
assign_aggregation_soillayers Man page Source code
benchmark_BLAS Source code
biomass Man page
calc.ScenarioWeather Man page Source code
calc.ensembles Source code
calc.loess_coeff Source code
calcDeltas Man page Source code
calc_BareSoilEvapCoefs Man page Source code
calc_Days_withLoweredPPT Man page Source code
calc_DurationFavorableConds Man page Source code
calc_RequestedSoilLayers Man page Source code
calc_SeedlingMortality Man page Source code
calc_SiteClimate Man page Source code
calc_TimeToGerminate Man page Source code
calc_assocYears Source code
calc_cell_ISRICWISE Man page Source code
calc_drylandindices Man page Source code
calc_getYears Source code
calc_ncfile_times Source code
calc_starts Source code
calc_timeSlices Man page Source code
calc_weights_from_depths Source code
check_SuitableGrowthThisYear Man page Source code
check_aggregated_output Man page Source code
check_cltool Man page Source code
check_data_agreement Source code
check_dbWeather_version Man page Source code
check_intracker_design Man page Source code
check_lock_content Man page Source code
check_monotonic_increase Man page Source code
check_nc_time_axis Source code
check_outputDB_completeness Man page Source code
check_rSFSW2_project_input_data Man page Source code
check_requested_sites Source code
check_soil_data Source code
check_soilco Man page Source code
check_weatherDB Man page Source code
circ_mean Man page Source code
circ_range Man page Source code
circ_sd Man page Source code
circular Man page
clean_SFSW2_cluster Man page Source code
clean_worker Man page Source code
climscen_determine_sources Man page Source code
climscen_metadata Man page Source code
coerce_sqlNames Source code
collect_EnsembleFromScenarios Source code
colnames_modification_status_dbWork Source code
colnames_need_outputs_dbWork Source code
colnames_work_dbWork Source code
compare_test_output Man page Source code
compare_two_dbOutput Man page Source code
compile_overall_timer Man page Source code
complete_with_defaultpaths Source code
controlExtremePPTevents Man page Source code
convert_precipitation Man page Source code
convert_temperature Man page Source code
convert_to_todo_list Source code
copy_tempdata_to_dbW Source code
cor2 Source code
create_dbWork Man page Source code
create_filename_for_Maurer2002_NorthAmerica Source code
create_job_df Source code
crs_units Man page Source code
cut0Inf Source code
daily_spells_permonth Source code
dbConnect2 Man page Source code
dbExecute2 Man page Source code
dbOut_check_values Man page Source code
dbOut_prepare1 Source code
dbOut_update_values Man page Source code
dbOutput_ListDesignTables Man page Source code
dbOutput_ListInternalTables Man page Source code
dbOutput_ListOutputTables Man page Source code
dbOutput_Tables_have_SoilLayers Man page Source code
dbOutput_create_DailyAggregationTable Source code
dbOutput_create_Design Source code
dbOutput_create_EnsembleTables Source code
dbOutput_create_OverallAggregationTable Source code
dbOutput_subset Man page Source code
dbOutput_update_OverallAggregationTable Man page Source code
dbVacuumRollack Man page Source code
dbW_disconnectConnection_local Source code
dbW_setConnection_local Source code
dbWork_Ntodo Man page Source code
dbWork_agg_timing Man page Source code
dbWork_check_design Man page Source code
dbWork_check_granular Man page Source code
dbWork_check_run Man page Source code
dbWork_check_status Man page Source code
dbWork_checkpoint Man page Source code
dbWork_clean Man page Source code
dbWork_redo Man page Source code
dbWork_report_completion Man page Source code
dbWork_timing Man page Source code
dbWork_todos Man page Source code
dbWork_update_IncludeYN Man page Source code
dbWork_update_granular Man page Source code
dbWork_update_job Man page Source code
dbWork_update_status Man page Source code
delete_test_output Man page Source code
determine_simulation_size Man page Source code
dir.copy Source code
dir.create2 Source code
dir_safe_create Man page Source code
do.vector Source code
doQmapQUANT Man page
doQmapQUANT.default_drs Man page Source code
doQmapQUANT_drs Man page Source code
do_ExtractElevation_HWSD_Global Source code
do_ExtractElevation_NED_USA Source code
do_OneSite Man page Source code
do_compare Man page Source code
do_compare_nc Man page Source code
do_copyCurrentConditionsFromDatabase Source code
do_import_objects Source code
do_ncvar_netCDF Source code
do_prior_TableLookups Man page Source code
downscale Man page
downscale.delta Man page Source code
downscale.deltahybrid Man page Source code
downscale.deltahybrid3mod Man page Source code
downscale.periods Man page Source code
downscale.raw Man page Source code
downscale.wgen_package Source code
dw_DayMet_NorthAmerica Source code
dw_Livneh2013_NorthAmerica Source code
dw_LookupWeatherFolder Source code
dw_Maurer2002_NorthAmerica Source code
dw_NCEPCFSR_Global Source code
dw_NRCan_10km_Canada Source code
dw_determine_sources Man page Source code
enable_debug_dump Man page Source code
endDoyAfterDuration Source code
erf Man page Source code
estimate_PotNatVeg_biomass Man page Source code
estimate_PotNatVeg_composition Man page Source code
exit_SFSW2_cluster Man page Source code
export_objects_to_workers Man page Source code
export_parallel_glovars Source code
extract2_Raster_SpatialPolygons Source code
extract_SFSW2_cells_from_raster Man page Source code
extract_SFSW2_cells_from_shp Man page Source code
extract_SFSW2_default Source code
extract_SFSW2_points_from_shp Man page Source code
extract_blocks Man page Source code
extract_climate_NCEPCFSR Man page Source code
extract_climate_NOAAClimAtlas Source code
extract_daily_weather_from_livneh Man page Source code
extract_from_external_raster_old Man page Source code
extract_rSFSW2 Man page
extract_rSFSW2,Raster,Raster,character-method Man page
extract_rSFSW2,Raster,SpatialPoints,character-method Man page
extract_rSFSW2,Raster,data.frame,character-method Man page
extract_rSFSW2,Raster,matrix,character-method Man page
extract_rSFSW2,Raster,vector,character-method Man page
extract_rSFSW2,SpatialPolygons,SpatialPoints,character-method Man page
extract_rSFSW2,SpatialPolygons,SpatialPolygons,character-method Man page
extract_rSFSW2,SpatialPolygons,matrix,character-method Man page
extract_rSFSW2,SpatialPolygons,vector,character-method Man page
extract_rSFSW2,character,ANY,character-method Man page
extract_soil_CONUSSOIL Man page Source code
extract_soil_ISRICWISE Man page Source code
extract_soillayer_ISRICWISE Source code
extract_variable_NEX Source code
extract_variable_netCDF Source code
extreme_values_and_doys Source code
fields_dailyAETExtremes Source code
fields_dailyC4_TempVar Source code
fields_dailyColdDays Source code
fields_dailyColdDegreeDays Source code
fields_dailyCoolDays Source code
fields_dailyDegreeDays Source code
fields_dailyDrainageExtremes Source code
fields_dailyFrostInSnowfreePeriod Source code
fields_dailyHotDays Source code
fields_dailyInfiltrationExtremes Source code
fields_dailyNRCS_Chambers2014_ResilienceResistance Source code
fields_dailyNRCS_Maestas2016_ResilienceResistance Source code
fields_dailyNRCS_SoilMoistureTemperatureRegimes Source code
fields_dailyNRCS_SoilMoistureTemperatureRegimes_Intermediates Source code
fields_dailyPrecipitationEventSizeDistribution Source code
fields_dailyPrecipitationFreeEventDistribution Source code
fields_dailyRechargeExtremes Source code
fields_dailyRegeneration_GISSM Source code
fields_dailyRegeneration_bySWPSnow Source code
fields_dailySWPdrynessANDwetness Source code
fields_dailySWPdrynessDurationDistribution Source code
fields_dailySWPdrynessEventSizeDistribution Source code
fields_dailySWPdrynessIntensity Source code
fields_dailySWPextremes Source code
fields_dailySnowpack Source code
fields_dailySoilWaterPulseVsStorage Source code
fields_dailySuitablePeriodsAvailableWater Source code
fields_dailySuitablePeriodsDrySpells Source code
fields_dailySuitablePeriodsDuration Source code
fields_dailyThermalDrynessStartEnd Source code
fields_dailyThermalDrynessStress Source code
fields_dailyThermalSWPConditionCount Source code
fields_dailyTotalEvaporationExtremes Source code
fields_dailyTranspirationExtremes Source code
fields_dailyWarmDays Source code
fields_dailyWeatherGeneratorCharacteristics Source code
fields_dailyWetDegreeDays Source code
fields_input_CO2Effects Source code
fields_input_ClimatePerturbations Source code
fields_input_FractionVegetationComposition Source code
fields_input_Phenology Source code
fields_input_SoilProfile Source code
fields_input_TranspirationCoeff Source code
fields_input_VegetationBiomassMonthly Source code
fields_input_VegetationBiomassTrends Source code
fields_input_VegetationPeak Source code
fields_monthlyAET Source code
fields_monthlyAETratios Source code
fields_monthlyDeepDrainage Source code
fields_monthlyHydraulicRedistribution Source code
fields_monthlyInfiltration Source code
fields_monthlyPET Source code
fields_monthlyPETratios Source code
fields_monthlyPPT Source code
fields_monthlyPlantGrowthControls Source code
fields_monthlyRunoff Source code
fields_monthlyRunon Source code
fields_monthlySPEIEvents Source code
fields_monthlySWAbulk Source code
fields_monthlySWCbulk Source code
fields_monthlySWPdryness Source code
fields_monthlySWPmatric Source code
fields_monthlySeasonalityIndices Source code
fields_monthlySnowpack Source code
fields_monthlySoilEvaporation Source code
fields_monthlySoilTemp Source code
fields_monthlyTemp Source code
fields_monthlyTranspiration Source code
fields_monthlyVPD Source code
fields_monthlyVWCbulk Source code
fields_monthlyVWCmatric Source code
fields_periodicVWCmatricFirstLayer Source code
fields_yearlyAET Source code
fields_yearlyDryWetPeriods Source code
fields_yearlyPET Source code
fields_yearlyPPT Source code
fields_yearlyTemp Source code
fields_yearlyTranspirationBySoilLayer Source code
fields_yearlyWaterBalanceFluxes Source code
fields_yearlymonthlyTemperateDrylandIndices Source code
file.copy2 Source code
fill_bounding_box Source code
fill_empty Source code
find_sites_with_bad_weather Man page Source code
finite01 Source code
fix_PPTdata_length Man page Source code
fix_rowlabels Source code
fname_dbWork Source code
fun_kLargest Man page Source code
gather_args_do_OneSite Source code
gather_objects_for_export Man page Source code
gather_project_inputs Source code
generate_OverallAggregation_fields Man page Source code
generate_RNG_streams Man page Source code
generate_ensembles Source code
germination_wait_times Man page Source code
get.DoyAtLevel Source code
get.DoyMostFrequentSuccesses Source code
get.LookupFromTable Source code
get.SeveralOverallVariables Man page Source code
get.SeveralOverallVariables_Ensemble Man page Source code
get.SeveralOverallVariables_Scenario Man page Source code
get.Table Man page Source code
get.Table_Ensemble Man page Source code
get.Table_Scenario Man page Source code
getIDs_from_db_Pids Source code
getLayersWidth Source code
getSiteIds Source code
getStartYear Source code
get_AET_dy Man page Source code
get_AET_mo Man page Source code
get_AET_yr Man page Source code
get_BareSoilEvapCoefs Man page Source code
get_CO2effects_yr Man page Source code
get_DF_from_temptxt Source code
get_DayMet_NorthAmerica Source code
get_DayMet_cellID Source code
get_DeepDrain_dy Man page Source code
get_DeepDrain_mo Man page Source code
get_DeepDrain_yr Man page Source code
get_Esurface_dy Man page Source code
get_Esurface_yr Man page Source code
get_GCMdata_NEX Man page Source code
get_GCMdata_netCDF Man page Source code
get_Inf_dy Man page Source code
get_Inf_mo Man page Source code
get_Inf_yr Man page Source code
get_Interception_yr Man page Source code
get_KilledBySoilLayers Man page Source code
get_NCEPCFSR_data Source code
get_PET_mo Man page Source code
get_PET_yr Man page Source code
get_PPT_dy Man page Source code
get_PPT_mo Man page Source code
get_PPT_yr Source code
get_Pid_from_temptxt Man page Source code
get_Response_aggL Man page Source code
get_RunOnOff_mo Man page Source code
get_RunOnOff_yr Man page Source code
get_SWE_dy Man page Source code
get_SWE_mo Man page Source code
get_SWPmatric_aggL Source code
get_SoilLayerID_from_temptxt Man page Source code
get_SpatialIndices_netCDF Source code
get_Temp_dy Man page Source code
get_Temp_mo Man page Source code
get_Temp_yr Man page Source code
get_TimeIndices_netCDF Source code
get_VPD_dy Source code
get_VPD_mo Man page Source code
get_Vegetation_yr Man page Source code
get_climatechange_data Source code
get_datasource_includefield Source code
get_datasource_masterfield Source code
get_fieldnames Man page Source code
get_fnames_dbTempOut Man page Source code
get_fnames_temporaryOutput Man page Source code
get_inserted_ids Source code
get_modifiedHardegree2006NLR Man page Source code
get_nc_time_axis Man page Source code
get_ncrecordvariable_name Source code
get_nctime_attributes Source code
get_ncvalues_at_times Source code
get_ncvar_attributes Source code
get_request_NEX Source code
get_simulation_time Man page Source code
get_tablename_from_temptxt Man page Source code
get_time_unit Source code
global_args_do_OneSite Man page Source code
gribDailyWeatherData Source code
gribMonthlyClimate Source code
handle_NAs Source code
has_NAs_pooled_at_depth Man page Source code
has_Pid Source code
has_Pid_SoilLayerID Source code
has_incompletedata Source code
has_nodata Source code
identify_soillayers Source code
in_box Source code
indices Man page
init_SFSW2_cluster Man page Source code
init_intracker Man page Source code
init_rSFSW2_project Man page Source code
init_soiltemperature Source code
init_timer Man page Source code
intersect2 Man page Source code
is.natural Man page Source code
isLeapYear Source code
is_ClimateForecastConvention Source code
is_NEX Source code
is_project_script_file_recent Man page Source code
isdone_intracker Man page Source code
it_Pid Man page Source code
it_Pid0 Man page Source code
it_exp Man page Source code
it_exp2 Man page Source code
it_scen2 Man page Source code
it_sim0 Man page Source code
it_sim2 Man page Source code
it_site Man page Source code
it_site2 Man page Source code
kill_seedling Man page Source code
list.dbTables Man page Source code
list.dbVariables Man page Source code
list.dbVariablesOfAllTables Man page Source code
list.dirs2 Source code
load_Rsw_treatment_templates Source code
load_preprocessed_inputs Man page Source code
load_project_description Man page Source code
local_weatherDirName Man page Source code
lock Man page
lock_access Man page Source code
lock_attempt Man page Source code
lock_init Man page Source code
make_dbOutput Man page Source code
make_dbTempOut Source code
make_dbW Man page Source code
make_test_output_reference Man page Source code
maker.climateScenarios Source code
map_input_variables Source code
max_depth_byPRIDs Source code
max_duration Source code
merge_2soils Man page Source code
missing_Pids_outputDB Man page Source code
move_dbTempOut_to_dbOut Man page Source code
move_output_to_dbOutput Man page Source code
move_temporary_to_outputDB Man page Source code
move_temporary_to_outputDB_withChecks Man page Source code
mpi_last Man page Source code
mpi_work Man page Source code
onAttach Source code
onLoad Source code
onUnload Source code
paste_SQLite_CREATETABLE Source code
pdf_to_swp Man page Source code
pdf_to_vwc Man page Source code
pedotransfer Man page Source code
populate_rSFSW2_project_with_data Man page Source code
pragmas Man page
predict_season Source code
prepare_ExtractData_Elevation Source code
prepare_ExtractData_Soils Man page Source code
prepare_MeanMonthlyClimate Source code
prepare_NCEPCFSR_extraction Source code
prepare_climatedata_netCDFs Man page Source code
print_debug Source code
print_debugN Source code
process_inputs Man page Source code
quickprepare_dbOutput_dbWork Man page Source code
rSFSW2 Man page
rSFSW2-package Man page
read_SOILWAT2_DefaultInputs Man page Source code
read_time_netCDF Man page Source code
reaggregate_raster Man page Source code
reaggregate_shapefile Man page Source code
reconstitute_inputfile Man page Source code
recreate_dbWork Man page Source code
regenerationThisYear_YN Source code
remove_from_onexit_expression Man page Source code
remove_lock Man page Source code
req_fields_SWRunInformation Source code
res_to_polygons Man page Source code
run_simulation_experiment Man page Source code
run_test_projects Man page Source code
save_to_rds_with_backup Man page Source code
scale_by_sum Source code
seq_month_ofeach_day Man page Source code
setBottomLayer Source code
setDeepestTopLayer Source code
setLayerSequence Source code
setTopLayer Source code
set_PRAGMAs Man page Source code
set_RNG_stream Man page Source code
set_full_RNG Man page Source code
set_glovar Man page Source code
set_options_warn_error Man page Source code
set_paths_to_dailyweather_datasources Source code
setup_RNG Man page Source code
setup_SFSW2_cluster Man page Source code
setup_aggregation_options Source code
setup_dbWork Man page Source code
setup_meandaily_output Source code
setup_rSFSW2_project_infrastructure Man page Source code
setup_scenarios Source code
setup_simulation_time Man page Source code
setup_spatial_simulation Man page Source code
simTiming_ForEachUsedTimeUnit Man page Source code
simulate_SOILWAT2_experiment Man page Source code
split_SQLite_CREATETABLE Source code
startDoyOfDuration Source code
stretch_values Man page Source code
swOutput_access Man page
sw_dailyC4_TempVar Man page Source code
synchronicity Man page
tabulate_values_in_bins Source code
test_sigmaGamma Man page Source code
test_sigmaNormal Man page Source code
time_agrees_with_ncfilename Source code
todo_intracker Man page Source code
transferExpDesignToInput Source code
try.ScenarioWeather Man page Source code
tryToGet_ClimDB Man page Source code
try_cell_ISRICWISE Man page Source code
unique_times Source code
unlock Man page
unlock_access Man page Source code
update_MeanMonthlyClimate Source code
update_actions Man page Source code
update_biomass Man page Source code
update_datasource_masterfield Source code
update_elevation_input Source code
update_intracker Man page Source code
update_project_paths Source code
update_requested_years Man page Source code
update_runIDs_sites_by_dbW Man page Source code
update_scenarios_with_ensembles Source code
update_soils_input Source code
update_todos Man page Source code
upgrade_datafile Man page Source code
upgrade_prodin_v10_to_v11 Man page Source code
upgrade_soilsin_v11_to_v12 Man page Source code
useSlices Source code
vp0 Man page Source code
vpd Man page Source code
weighted.agg Man page Source code
whereNearest Man page Source code
writeDailyWeatherData Source code
writeMonthlyClimate Source code
write_timer Source code
Burke-Lauenroth-Lab/rSFSW2 documentation built on March 17, 2019, 4:53 p.m.