getMedSenLineActivity: Returns a vector of median sensitive cell line activity...
In CBIIT/rcellminer: rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
Description
Usage
Arguments
Value
Examples
View source: R/getMedSenLineActivity.R
Description
Returns a vector of median sensitive cell line activity (-logGI50) values
for a set of compounds.
Usage
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getMedSenLineActivity(
idSet,
senLineActZThreshold = 0.5,
onlyCellMinerExps = TRUE,
dataSource = "NCI60"
)
Arguments
idSet
a character vector specifying identifier(s) for compound(s) of interest.
senLineActZThreshold
the minimum activity z-score for a sensitive cell line (default=0.5).
onlyCellMinerExps
a logical value indicating whether to base results strictly on
experimental data included in CellMiner (default=TRUE).
dataSource
character string indicating data source (default="NCI60").
Currently only "NCI60" is supported.
Value
a numeric vector of median sensitive cell line activity (-logGI50) values indexed
by the identifiers in idSet.
Examples
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idSet <- c("609699", "740")
getMedSenLineActivity(idSet)
CBIIT/rcellminer documentation built on July 28, 2021, 8:51 a.m.
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Description Usage Arguments Value Examples
View source: R/getMedSenLineActivity.R
Description
Returns a vector of median sensitive cell line activity (-logGI50) values for a set of compounds.
Usage
1 2 3 4 5 6 | getMedSenLineActivity(
idSet,
senLineActZThreshold = 0.5,
onlyCellMinerExps = TRUE,
dataSource = "NCI60"
)
|
Arguments
idSet |
a character vector specifying identifier(s) for compound(s) of interest. |
senLineActZThreshold |
the minimum activity z-score for a sensitive cell line (default=0.5). |
onlyCellMinerExps |
a logical value indicating whether to base results strictly on experimental data included in CellMiner (default=TRUE). |
dataSource |
character string indicating data source (default="NCI60"). Currently only "NCI60" is supported. |
Value
a numeric vector of median sensitive cell line activity (-logGI50) values indexed by the identifiers in idSet.
Examples
1 2 | idSet <- c("609699", "740")
getMedSenLineActivity(idSet)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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