annovar_guess_reference_table: Guess reference table used for annovar annotation
In CCICB/CRUX: Easily explore patterns of somatic variation in cancer using 'CRUX'
View source: R/fct_filetype_guesser.R
annovar_guess_reference_table R Documentation
Guess reference table used for annovar annotation
Description
Reads the first line of a file and confirms that it is an ANNOVAR file, then returns 'ensGene' or 'refGene'
base on whether refseq or ensemble reference tables were for gene-based annotations
Usage
annovar_guess_reference_table(path)
Arguments
path
path to file
Value
one of MAF, ANNOVAR, VCF, OTHER
CCICB/CRUX documentation built on Jan. 28, 2024, 10:12 p.m.
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View source: R/fct_filetype_guesser.R
| annovar_guess_reference_table | R Documentation |
Guess reference table used for annovar annotation
Description
Reads the first line of a file and confirms that it is an ANNOVAR file, then returns 'ensGene' or 'refGene' base on whether refseq or ensemble reference tables were for gene-based annotations
Usage
annovar_guess_reference_table(path)
Arguments
path |
path to file |
Value
one of MAF, ANNOVAR, VCF, OTHER
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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