external_tools_get_property_by_tool_name: external_tools_get_property_by_tool_name

In CCICB/CRUX: Easily explore patterns of somatic variation in cancer using 'CRUX'

external_tools_get_property_by_tool_name

Description

external_tools_get_property_by_tool_name

Usage

external_tools_get_property_by_tool_name(
  tool_name,
  property_to_retrieve,
  external_tools_df = external_tool_metadata
)

Arguments

tool_name	name of tool
property_to_retrieve	which property to retrieve. see details for options. (string)
external_tools_df	the dataframe to add tool metadata to. By default, will use global variable: GLOBAL_external_tools_dataframe

Details

Options for property_to_retrieve

• tool_name

• tool_id

• tool_group

• tool_class

• tool_description

• instructions

• website

• doi

• requires_maf_export

• requires_gene_selection

• maf_conversion_function

• extension

See ?external_tools_add_tool_to_dataframe for more info on these properties

run external_tool_metadata to see the built in tool metadata dataframe

Value

value of retrieved property (string)

Examples

CRUX:::external_tools_get_property_by_tool_name(tool_name = "OncodriveFML", "website")

CCICB/CRUX documentation built on Jan. 28, 2024, 10:12 p.m.