examples/ex_sample_test_1ctrl.R

In CDecamps/penda: A R package that performs personalized differential analysis of comics data

# First, load and define the data
dataset = penda::make_dataset_1ctrl(
  penda::penda_data_ctrl[1:10, 1],
  penda::penda_data_case[1:10, 1:3]
)
controls = dataset$data_ctrl
sample = dataset$data_case[,1]
# Second, lower and higher lists are computed
L_H_list = penda::compute_lower_and_higher_lists_1ctrl(controls, s_max = 50)
# Third, test is the expression is deregulated for each gene of a sample.

res_sample = penda::sample_test_1ctrl(sample,
                                iterations = 20,
                                threshold = 0.03)