Files in CNRGH/crimmix

Multi-omics Integration

R/IntMultiOmics.R R/LOO.R R/adjustedRIComputing.R R/doCIMLR.R R/doConsensusClustering.R R/doICluster.R R/doIntNMF.R R/doLRAcluster.R R/doMCIA.R R/doMOFA.R R/doMixKernel.R R/doMoa.R R/doPINSPLUS.R R/doRGCCA.R R/doSGCCA.R R/doSNF.R R/extractPos.R R/remove_i.R R/roc_eval.R R/simulateData.R README.md inst/R_scripts/BXD/01.loadData.R inst/R_scripts/BXD/02.runMethods.R inst/R_scripts/BXD/03.plot.R inst/R_scripts/Obesity/01.loadData.R inst/R_scripts/Obesity/02.runMethods.R inst/R_scripts/Obesity/03.plot.R inst/R_scripts/Simulations/00.setup.R inst/R_scripts/Simulations/01.Simulation.R inst/R_scripts/Simulations/02.RunMethods.R inst/R_scripts/Simulations/03.resultsARI.R inst/R_scripts/Simulations/04.resultsROC.R inst/R_scripts/Simulations/05.LOO.R inst/R_scripts/Simulations/06.TimePlot.R inst/R_scripts/Simulations/07.Evaluate_choice_K.R inst/R_scripts/Simulations/08.CombineDatasets.R inst/R_scripts/Simulations/09.Correlations.R inst/R_scripts/Single_cell/00.loadData.R inst/R_scripts/TCGA_liver/01.loadData.R inst/R_scripts/TCGA_liver/02.runMethods.R inst/R_scripts/TCGA_liver/03.CrossValidation.R inst/R_scripts/TCGA_liver/03.plot.R inst/R_scripts/TCGA_liver/04.PCAview.R inst/R_scripts/TCGA_liver/05.survivalAnalysis.R inst/R_scripts/integraal/integraalTest.R inst/Simulations_b1to4/Figs/Clust_eval,noise=0,1.pdf inst/Simulations_b1to4/Figs/Clust_eval,noise=0,2.pdf inst/Simulations_b1to4/Figs/Clust_eval,noise=0,5.pdf inst/Simulations_b1to4/Figs/Clust_eval,noise=1.pdf inst/Simulations_b1to4/Figs/Clust_eval.pdf inst/Simulations_b1to4/Figs/F1_eval_dat1.pdf inst/Simulations_b1to4/Figs/F1_eval_dat2.pdf inst/Simulations_b1to4/R_scripts/00.description.R inst/Simulations_b1to4/R_scripts/00.setup.R inst/Simulations_b1to4/R_scripts/01.runMethods.R inst/Simulations_b1to4/R_scripts/02.ARI_computing.R inst/Simulations_b1to4/R_scripts/03.ROC_eval.R inst/Simulations_b1to4/R_scripts/04.LOO.R inst/Simulations_b1to4/R_scripts/05.PCA.R inst/Simulations_b1to4/R_scripts/06.InfluenceParam..R inst/Simulations_b1to4/R_scripts/07.time.R inst/Simulations_b1to4/R_scripts/08.TimePlot.R inst/Simulations_b5/R_scripts/00.setup.R inst/Simulations_b5/R_scripts/00.setup_parameters.R inst/Simulations_b5/R_scripts/01.runMethods.R inst/Simulations_b5/R_scripts/02.ARI_computing.R inst/Simulations_b5/R_scripts/03.ROC_eval.R inst/Simulations_b5/R_scripts/04.LOO.R inst/Simulations_b5/R_scripts/05.PCA.R inst/Simulations_b6to7/R_scripts/00.setup.R inst/Simulations_b6to7/R_scripts/00.setup_parameters.R inst/Simulations_b6to7/R_scripts/01.runMethods.R inst/Simulations_b6to7/R_scripts/02.ARI_computing.R inst/Simulations_b6to7/R_scripts/03.ROC_eval.R inst/Simulations_b6to7/R_scripts/04.LOO.R inst/Simulations_b6to7/R_scripts/05.PCA.R man/IntMultiOmics.Rd man/LOO.Rd man/adjustedRIComputing.Rd man/doCIMLR.Rd man/doConsensusClustering.Rd man/doIntNMF.Rd man/doLRAcluster.Rd man/doMCIA.Rd man/doMOFA.Rd man/doMixKernel.Rd man/doMoa.Rd man/doPINSPlus.Rd man/doRGCCA.Rd man/doSGCCA.Rd man/doSNF.Rd man/doiCluster.Rd man/extractPos.Rd man/plot_roc_eval.Rd man/remove_i.Rd man/roc_eval.Rd man/simulateY.Rd vignettes/Heatmap.Rmd vignettes/InfluenceParam_vignette.Rmd vignettes/InfluenceParam_vignette.pdf vignettes/MOInt_vignette.Rmd vignettes/MOInt_vignette.pdf