Man pages for CRI-iAtlas/ImmuneSubtypeClassifier
An R package for classification of immune subtypes, in cancer, using gene expression data.
| breakBin | featureSelection Subset the genes, given a matrix |
| callEnsemble | callEnsemble Make subtype calls for each sample |
| callOneSubtype | callOneSubtype Make subtype calls for one sample |
| callSubtypes | callSubtypes Make subtype calls for each sample |
| createPairsFeatures | createPairsFeatures given a matrix and gene pairs, create... |
| cvFitOneModel | cvfitOneModel Train a single subtype model using cross... |
| dataProc | dataProc Data preprocessing |
| featureSelection | featureSelection Subset the genes, given a matrix |
| fitEnsembleModel | fitEnsembleModel Train a single subtype model using cross... |
| fitOneModel | fitOneModel Train a single subtype model. |
| fitSubtypeModel | fitSubtypeModel Train a single subtype model using cross... |
| geneMatch | geneMatch Match the incoming data to what was used in... |
| geneMatchErrorReport | geneMatchErrorReport Check whether the incoming data matches... |
| importantFeatures | Build the importance table. |
| modelPerf | modelPerf Checking model performance. |
| modelPerf2 | Checking model performance when Y is multiple valued |
| parCallEnsemble | parCallEnsemble Parallel version: Make subtype calls for each... |
| subtypePerf | Checking model performance. |
| testFun | testFun Get difference in mean rank sums for a single gene |
| trainDataProc | trainDataProc Data preprocessing |
