callSubtypes: callSubtypes Make subtype calls for each sample

In CRI-iAtlas/ImmuneSubtypeClassifier: An R package for classification of immune subtypes, in cancer, using gene expression data.

callSubtypes Make subtype calls for each sample

Description

callSubtypes Make subtype calls for each sample

Usage

callSubtypes(mods, X)

Arguments

mods	xgboost model list
X	gene expression matrix, genes in rows, samples in columns

Value

table, column 1 is best call, remaining columns are subtype prediction scores.

Examples

calls <- callSubtypes(mods, X)

CRI-iAtlas/ImmuneSubtypeClassifier documentation built on Oct. 1, 2022, 10:50 a.m.