callEnsemble: callEnsemble Make subtype calls for each sample

In CRI-iAtlas/ImmuneSubtypeClassifier: An R package for classification of immune subtypes, in cancer, using gene expression data.

callEnsemble Make subtype calls for each sample

Description

callEnsemble Make subtype calls for each sample

Usage

callEnsemble(X, path = "data", geneids = "symbol")

Arguments

X	gene expression matrix, genes in row.names, samples in column.names
path	the path to the ensemble model, stored as RData, and named 'ens'
geneids	either hgnc for gene symbols or entrez ids. will be matched to the EB++ matrix

Value

table, column 1 is best call, remaining columns are subtype prediction scores.

Examples

calls <- callEnsemble(mods, X, Y)

CRI-iAtlas/ImmuneSubtypeClassifier documentation built on Oct. 1, 2022, 10:50 a.m.