parCallEnsemble: parCallEnsemble Parallel version: Make subtype calls for each...

In CRI-iAtlas/ImmuneSubtypeClassifier: An R package for classification of immune subtypes, in cancer, using gene expression data.

parCallEnsemble Parallel version: Make subtype calls for each sample

Description

parCallEnsemble Parallel version: Make subtype calls for each sample

Usage

parCallEnsemble(X, path = "data", geneids = "symbol", numCores = 2)

Arguments

X	gene expression matrix, genes in row.names, samples in column.names
path	the path to the ensemble model, stored as RData, and named 'ens'
geneids	either hgnc for gene symbols or entrez ids. will be matched to the EB++ matrix
numCores	number of cores to use with parallel lib

Value

table, column 1 is best call, remaining columns are subtype prediction scores.

Examples

calls <- callEnsemble(mods, X, Y)

CRI-iAtlas/ImmuneSubtypeClassifier documentation built on Oct. 1, 2022, 10:50 a.m.