Files in CenterForStatistics-UGent/SPsimSeq
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/NGPscData.R
R/SPsimPerGene.R
R/SPsimSeq-package.R
R/SPsimSeq.R
R/buildXmat.R
R/calculateCPM.R
R/checkInputValidity.R
R/chooseCandGenes.R
R/configExperiment.R
R/constructDens.R
R/estLibSizeDistr.R
R/evaluateDensities.R
R/extractMat.R
R/fitLLmodel.R
R/fitPoisGlm.R
R/fracZeroLogitModel.R
R/genCopula.R
R/genLibSizes.R
R/geneParmEst.R
R/matchCopula.R
R/obtCorMatsBatch.R
R/obtCount.R
R/prepareSPsimOutputs.R
R/samZeroID.R
R/selectGenes.R
R/zeroProbModel.R
R/zhangData.R
README.Rmd
README.md
data/scNGP.data.rda
data/zhang.data.sub.rda
inst/CITATION
inst/NEWS.Rmd
inst/NEWS.md
man/SPsimPerGene.Rd
man/SPsimSeq-package.Rd
man/SPsimSeq.Rd
man/buildXmat.Rd
man/calculateCPM.Rd
man/checkInputValidity.Rd
man/chooseCandGenes.Rd
man/configExperiment.Rd
man/constructDens.Rd
man/estLibSizeDistr.Rd
man/evaluateDensities.Rd
man/expit.Rd
man/extractMat.Rd
man/fitLLmodel.Rd
man/fitPoisGlm.Rd
man/fracZeroLogitModel.Rd
man/genCopula.Rd
man/genLibSizes.Rd
man/geneParmEst.Rd
man/matchCopula.Rd
man/obtCorMatsBatch.Rd
man/obtCount.Rd
man/parmEstDensVec.Rd
man/prepareSPsimOutputs.Rd
man/samZeroID.Rd
man/scNGP.data.Rd
man/selectGenes.Rd
man/zeroProbModel.Rd
man/zhang.data.sub.Rd
tests/testthat.R
tests/testthat/test-SPsimSeq-input.R
tests/testthat/test-SPsimSeq-output.R
tests/testthat/test-buildXmat-output.R
tests/testthat/test-configExperiment-output.R
tests/testthat/test-fitPoisGlm-output.R
tests/testthat/test-selectGenes-output.R
vignettes/SPsimSeq.Rmd
vignettes/references.bib
