extractData: Helper function to extract data matrix from phyloseq,...

View source: R/extractData.R

extractDataR Documentation

Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows

Description

Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows

Usage

extractData(data, logTransformGaussian = TRUE)

Arguments

data

The list of data objects, either matrix, phyloseq or ExpressionSet objects

logTransformGaussian

A boolean, should array data be logtransformed

Value

the raw data matrices, samples in the rows

Examples

data(Zhang)
matrixList = extractData(list("microbiome" = zhangMicrobio,
"metabolome" = zhangMetabo))

CenterForStatistics-UGent/combi documentation built on Aug. 22, 2023, 11:02 p.m.