extractMat: A function to extract a data matrix from a number of objects

In CenterForStatistics-UGent/combi: Compositional omics model based visual integration

A function to extract a data matrix from a number of objects

Description

A function to extract a data matrix from a number of objects

Usage

extractMat(Y, ...)

## S4 method for signature 'ExpressionSet'
extractMat(Y, logTransformGaussian, ...)

## S4 method for signature 'SummarizedExperiment'
extractMat(Y, ...)

## S4 method for signature 'matrix'
extractMat(Y, ...)

Arguments

Y	a phyloseq or eSet object, or another object, or a raw data matrix
...	additional arguments for the extractor function
logTransformGaussian	A boolean, should array data be logtransformed

Value

A data matrix with samples in the rows and features in the columns

CenterForStatistics-UGent/combi documentation built on Aug. 22, 2023, 11:02 p.m.