Files in CenterForStatistics-UGent/compIntegrate
Compositional omics model based visual integration
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/addLink.R
R/arrayMult.R
R/buildCentMat.R
R/buildCompMat.R
R/buildConfMat.R
R/buildCovMat.R
R/buildEmptyJac.R
R/buildMarginalOffset.R
R/buildMu.R
R/buildMuMargins.R
R/buildOffsetModel.R
R/checkAlias.R
R/checkMeanVarTrend.R
R/checkMonotonicity.R
R/combi.R
R/convPlot.R
R/data.R
R/deriv2LagrangianFeatures.R
R/deriv2LagrangianLatentVars.R
R/deriv2LagrangianLatentVarsConstr.R
R/derivLagrangianFeatures.R
R/derivLagrangianLatentVars.R
R/derivLagrangianLatentVarsConstr.R
R/estFeatureParameters.R
R/estIndepModel.R
R/estLatentVars.R
R/estMeanVarTrend.R
R/estOff.R
R/extractCoords.R
R/extractData.R
R/filterConfounders.R
R/getInflLatentVar.R
R/gramSchmidtOrth.R
R/indentPlot.R
R/inflPlot.R
R/influence.combi.R
R/jacConfounders.R
R/jacConfoundersComp.R
R/jacFeatures.R
R/jacLatentVars.R
R/jacLatentVarsConstr.R
R/plot.combi.R
R/polyHorner.R
R/predictSpline.R
R/prepareJacMat.R
R/prepareJacMatComp.R
R/prepareScoreMat.R
R/print.combi.R
R/quasiJacIndep.R
R/quasiScoreIndep.R
R/rowMultiply.R
R/scoreConfounders.R
R/scoreConfoundersComp.R
R/scoreFeatureParams.R
R/scoreLatentVars.R
R/seqM.R
R/trimOnConfounders.R
README.Rmd
README.md
README_files/figure-markdown_github/colourPlot-1.png
README_files/figure-markdown_github/colourPlotConstr-1.png
README_files/figure-markdown_github/convPlot-1.png
README_files/figure-markdown_github/inflPlot-1.png
README_files/figure-markdown_github/simplePlot-1.png
data/Zhang.RData
inst/CITATION
inst/NEWS.md
inst/extdata/zhangFits.RData
inst/scripts/fitScript.R
man/addLink.Rd
man/arrayMult.Rd
man/buildCentMat.Rd
man/buildCompMat.Rd
man/buildConfMat.Rd
man/buildCovMat.Rd
man/buildEmptyJac.Rd
man/buildMarginalOffset.Rd
man/buildMu.Rd
man/buildMuMargins.Rd
man/buildOffsetModel.Rd
man/checkAlias.Rd
man/checkMeanVarTrend.Rd
man/checkMonotonicity.Rd
man/combi.Rd
man/convPlot.Rd
man/deriv2LagrangianFeatures.Rd
man/deriv2LagrangianLatentVars.Rd
man/deriv2LagrangianLatentVarsConstr.Rd
man/derivLagrangianFeatures.Rd
man/derivLagrangianLatentVars.Rd
man/derivLagrangianLatentVarsConstr.Rd
man/estFeatureParameters.Rd
man/estIndepModel.Rd
man/estLatentVars.Rd
man/estMeanVarTrend.Rd
man/estOff.Rd
man/extractCoords.Rd
man/extractData.Rd
man/extractMat.Rd
man/filterConfounders.Rd
man/getInflLatentVar.Rd
man/gramSchmidtOrth.Rd
man/indentPlot.Rd
man/inflPlot.Rd
man/influence.combi.Rd
man/jacConfounders.Rd
man/jacConfoundersComp.Rd
man/jacFeatures.Rd
man/jacLatentVars.Rd
man/jacLatentVarsConstr.Rd
man/plot.combi.Rd
man/polyHorner.Rd
man/predictSpline.Rd
man/prepareJacMat.Rd
man/prepareJacMatComp.Rd
man/prepareScoreMat.Rd
man/print.combi.Rd
man/quasiJacIndep.Rd
man/quasiScoreIndep.Rd
man/rowMultiply.Rd
man/scaleCoords.Rd
man/scoreConfounders.Rd
man/scoreConfoundersComp.Rd
man/scoreFeatureParams.Rd
man/scoreLatentVars.Rd
man/seqM.Rd
man/trimOnConfounders.Rd
man/zhangMetabo.Rd
man/zhangMetavars.Rd
man/zhangMicrobio.Rd
tests/testthat.R
tests/testthat/test-combiinput.R
tests/testthat/test-rowMultiply.R
tests/testthat/test-seqM.R
vignettes/combi.Rmd
