Man pages for Chang-Yu-Chang/MigrationCommunity
Microbial Consumer-Resource Model
| adjacency_make | Make adjacency matrix from network |
| beta_diversity | Calculate mean beta diversity |
| commnity_generate | Generate a community sampled from regional pool |
| community_coalesce | Coalesce the communities |
| community_coalesce2 | Coalesce the communities |
| CR_model | Simulate consumer-resource dynamics |
| CR_ode | ODE of consumer-resource model |
| dist_to_diag | Distance to diagonal |
| elo_rank | Calculate competition ranking by elo |
| heatmap_network_plot | Plot competitive network in competitive heatmap |
| motif_count | Motif count |
| network_make | Make network |
| network_plot | Plot competitive network |
| network_randomize | Shuffle the network while keeping the node degree |
| null_network_make | Make random null network for motif |
| parameter_load | Read the parameters for building up a species pool |
| parameter_write | Read the parameters saved in the result text file |
| pool_build | Build the regional species pool |
| relative_abundance_plot | Plot the relative abundance at family level |
| result_isolate_read | Read simulated result |
| result_pair_read | Read simulated result |
| result_read | Read simulated result |
| stab_pool_build | Turn stabilized community (mature media) as a species pool |
