adjacency_make | Make adjacency matrix from network |
beta_diversity | Calculate mean beta diversity |
commnity_generate | Generate a community sampled from regional pool |
community_coalesce | Coalesce the communities |
community_coalesce2 | Coalesce the communities |
CR_model | Simulate consumer-resource dynamics |
CR_ode | ODE of consumer-resource model |
dist_to_diag | Distance to diagonal |
elo_rank | Calculate competition ranking by elo |
heatmap_network_plot | Plot competitive network in competitive heatmap |
motif_count | Motif count |
network_make | Make network |
network_plot | Plot competitive network |
network_randomize | Shuffle the network while keeping the node degree |
null_network_make | Make random null network for motif |
parameter_load | Read the parameters for building up a species pool |
parameter_write | Read the parameters saved in the result text file |
pool_build | Build the regional species pool |
relative_abundance_plot | Plot the relative abundance at family level |
result_isolate_read | Read simulated result |
result_pair_read | Read simulated result |
result_read | Read simulated result |
stab_pool_build | Turn stabilized community (mature media) as a species pool |
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