commnity_generate: Generate a community sampled from regional pool

In Chang-Yu-Chang/MigrationCommunity: Microbial Consumer-Resource Model

Description

The community is sampled from regional species pool. The output is modified so it fits the argument format for CR_model().

Usage

community_generate(pool = regional_pool, I = 0.01, threshold = 1e-05,
  seed = 1)

Arguments

I	inocula drop size
threshold	minimal detectable size or extinction threshold of microbes
seed	seed for sampling

Value

a named vector

See Also

https://github.com/Chang-Yu-Chang/micro.crm for package page, community_coalesce

Examples

# Load packages and example parameters
library(tidyverse)
data(example_parameter)

# Build regional species pool
pool_build(save_data = FALSE)

# Generate a community sample from pool
community_generate(pool = regional_pool, I = 1e-2, threshold = 1e-4)

## Not run: 
community_generate("bad")

## End(Not run)

Chang-Yu-Chang/MigrationCommunity documentation built on Aug. 13, 2019, 9:41 p.m.