Man pages for CharleneZ95/infercnvPlus
Enhanced 'infercnv' package
| calcCNV | Calculate CNV scores given a matrix of RNASeq counts. Output... |
| denoiseVis | Remove values that are too close to the average and are... |
| extractCells | Subtract cells from specific branches |
| gtf_to_position | Generate a genomic positions file from a GTF file |
| importSrat | Import a Seurat(v3) object and convert it to matrix for... |
| inferCNV | Infer CNV changes given a matrix of RNASeq counts. Output a... |
| plotCNV | Clustering and plotting cells based on cnv score matrix using... |
| pruneCutree | Prune cutree to dendlist Args: |
| umi_to_log2tpm | Transform UMI to log2(TPM+1) |
| visualCNV | Clustering and plotting cells based on cnv score matrix using... |
