importSrat: Import a Seurat(v3) object and convert it to matrix for...

Description Usage Arguments Value

View source: R/utils.R

Description

Args:

Usage

1
importSrat(obj, slot = "counts", assay = "RNA", log2tpm_tr = TRUE)

Arguments

slot

slot to use

assay

which assays to use.

log2tpm_tr

boolean value specifying if transform UMI to log2(TPM+1) or not.

data

a Seurat object.

Value

Return a TPM log2-transformed matrix.


CharleneZ95/infercnvPlus documentation built on April 9, 2020, 3:40 a.m.