Description Usage Arguments Value
Args:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 |
data: |
an 'infercnv' object as produced by inferCNV. |
assay: |
assay which assigned to use for plotting. |
ref_lab: |
label for reference cells. |
obs_lab: |
label for observations. |
dist_method: |
distance measure used in clustering cells, possible values are 'correlation' for Pearson correlation and all the distances supported by stats::dist. |
clustering_method: |
clustering method used. Accepts the same values as stats::hclust. |
cutree_k: |
an integer scalar or vector with the desired number of groups |
colors: |
vector of colors used in heatmap. |
border: |
whether draw border. The value can be logical or a string of color. |
out_file: |
filename to save plot |
out_path: |
output directory |
Returns an 'infercnv' object including: 1. Clustering result. 2. Dendlist of 'cutree'.
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