denoiseVis: Remove values that are too close to the average and are...

Description Usage Arguments Value

View source: R/utils.R

Description

Args:

Usage

1
denoiseVis(data = NULL, noise_threshold = NULL, vis_bounds = "-1,1")

Arguments

noise_threshold

the minimum difference a value can be from the average reference in order for it not to be removed as noise.

vis_bounds

used as upper and lower bounds for values in the visualization. Should be given in the form of '-1,1' (lower bound, upper bound).

smooth_matrix

a matrix of values, smoothed, and with average reference removed. Row = Genes, Col = Cells.

Value

Returns an 'infercnv' object including: denoised matrix.


CharleneZ95/infercnvPlus documentation built on April 9, 2020, 3:40 a.m.