denoiseVis: Remove values that are too close to the average and are...
In CharleneZ95/infercnvPlus: Enhanced 'infercnv' package
Description
Usage
Arguments
Value
Description
Args:
Usage
1
denoiseVis(data = NULL, noise_threshold = NULL, vis_bounds = "-1,1")
Arguments
noise_threshold
the minimum difference a value can be from the
average reference in order for it not to be
removed as noise.
vis_bounds
used as upper and lower bounds for values in the visualization.
Should be given in the form of '-1,1' (lower bound, upper bound).
smooth_matrix
a matrix of values, smoothed, and with average
reference removed. Row = Genes, Col = Cells.
Value
Returns an 'infercnv' object including: denoised matrix.
CharleneZ95/infercnvPlus documentation built on April 9, 2020, 3:40 a.m.
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Description Usage Arguments Value
Description
Args:
Usage
1 | denoiseVis(data = NULL, noise_threshold = NULL, vis_bounds = "-1,1")
|
Arguments
noise_threshold |
the minimum difference a value can be from the average reference in order for it not to be removed as noise. |
vis_bounds |
used as upper and lower bounds for values in the visualization. Should be given in the form of '-1,1' (lower bound, upper bound). |
smooth_matrix |
a matrix of values, smoothed, and with average reference removed. Row = Genes, Col = Cells. |
Value
Returns an 'infercnv' object including: denoised matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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