downloadEncode: Download files from the Internet.
In CharlesJB/ENCODExplorer-release: A compilation of ENCODE metadata

Description Usage Arguments Details Value Examples

After processing to a basic search with the searchEncode function or a precise search thanks to the queryEncode function, you can proceed to the downloading of all the corresponding files.

1 2	downloadEncode(df = NULL, resultSet = NULL, resultOrigin = NULL, format = "all", dir = ".")

`df`	`list` of two `data.frame` containing ENCODE experiment and dataset metadata.
`resultSet`	the results set.
`resultOrigin`	name of the function used to generate the result set (`searchEncode` or `queryEncode`)
`format`	file format, default = all
`dir`	the name of the directory where the downloaded file will be saved. Default = current directory

This function can be used to download a set of files by providing the results set, its origin (searchEncode or queryEncode), the file format and finally the destination directory.

void

resultSet <- queryEncode(biosample = "A549", file_format = "bam")
  ## Not run: 
  downloadEncode(resultSet = resultSet, dir = ".")
  
## End(Not run)