export_ENCODEdb_matrix: Extract essential informations from the RSQLite databse in a...

In CharlesJB/ENCODExplorer-release: A compilation of ENCODE metadata

Description

Extract essential informations from the RSQLite databse in a list of data.frames

Usage

export_ENCODEdb_matrix(database_filename)

Arguments

database_filename

The name of the file to save the database into. Default: ENCODEdb.sqlite.

Value

a list containing two elements. The first one 'experiment' is a data.frame containing essential informations for each file part of an experiment ; the second one 'dataset' is a data.frame containing essential informations for each file part of a dataset.

Examples

database_filename <- system.file("extdata/ENCODEdb.sqlite",
                                   package = "ENCODEdb")
  ## Not run: 
    export_ENCODEdb_matrix(database_filename = database_filename)
  
## End(Not run)

CharlesJB/ENCODExplorer-release documentation built on May 6, 2019, 9:57 a.m.