prepare_ENCODEdb: Create the RSQLite databse for the tables in ENCODE

In CharlesJB/ENCODExplorer-release: A compilation of ENCODE metadata

Description

Create the RSQLite databse for the tables in ENCODE

Usage

prepare_ENCODEdb(database_filename = "inst/extdata/ENCODEdb.sqlite",
  types = get_encode_types(), overwrite = FALSE)

Arguments

database_filename	The name of the file to save the database into. Default: ENCODEdb.sqlite.
types	The names of the tables to extract from ENCODE rest api.
overwrite	Should tables already present in database be overwrited? Default: FALSE.

Value

is a list with selected tables from ENCODE that were used to create the RSQLite database.

Examples

prepare_ENCODEdb(database_filename = "platform.sql", types = "platform")
file.remove("platform.sql")
  ## Not run: 
    prepare_ENCODEdb("ENCODEdb.sqlite")
  
## End(Not run)

CharlesJB/ENCODExplorer-release documentation built on May 6, 2019, 9:57 a.m.