CharlieCarpenter/tidyMicro
A Pipeline for Microbiome Analysis and Visualization

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167
Source code
64
Man pages
35
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CharlieCarpenter/tidyMicro: A Pipeline for Microbiome Analysis and Visualization
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API

API for CharlieCarpenter/tidyMicro
A Pipeline for Microbiome Analysis and Visualization

Global functions
%>% Man page
.data Man page
:= Man page
A_matricization Source code
Anova_SS Source code
Anova_SS_bb Source code
FE.con Source code
FE_bb Source code
N.con Source code
T3_plots Source code
Taxa_ord Source code
U_matrices Source code
adonis_formula Source code
agg_bars Source code
alpha_div Man page Source code
as_label Man page
as_name Man page
bb_agg_bars Source code
bb_agg_categ Source code
bb_agg_ccint Source code
bb_agg_qcint Source code
bb_agg_qqint Source code
bb_agg_quant Source code
bb_bars Man page Source code
bb_bars_categ Source code Source code
bb_bars_ccint Source code Source code
bb_bars_qcint Source code Source code
bb_bars_qqint Source code Source code
bb_bars_quant Source code Source code
bb_categ_bars Source code
bb_categ_est Source code
bb_ccint_bars Source code
bb_ccint_est Source code
bb_ci_est Source code
bb_coef_est Source code
bb_mods Man page Source code
bb_qcint_bars Source code
bb_qcint_est Source code
bb_qqint_bars Source code
bb_qqint_est Source code
bb_quant_bars Source code
beta_div Man page Source code
beta_heatmap Man page Source code
bpd_cla Man page
bpd_clin Man page
bpd_fam Man page
bpd_ord Man page
bpd_phy Man page
by_fun Source code
categ_bars Source code
categ_est Source code
ccint_bars Source code
ccint_est Source code
chao1 Source code
ci_est Source code
coef_est Source code
cor_heatmap Man page Source code
cor_rocky_mtn Man page Source code
cov_int Source code
cov_str Source code
cov_type Source code
enquo Man page
enquos Man page
ex_filter Source code
expr Man page
formula_fun Source code
formula_fun_bb Source code
goods Source code
jointplot Source code
kruskal_rank_sum_mod Source code
kruskal_rank_sum_no_mod Source code
micro_PERMANOVA Man page Source code
micro_alpha_reg Man page Source code
micro_biplot Source code
micro_chisq Man page Source code
micro_forest Man page Source code
micro_heatmap Man page Source code
micro_otu Man page Source code
micro_pca Man page Source code
micro_rank_sum Man page Source code
micro_rocky_mtn Man page Source code
mod.chisq Source code
mrsa_clin Man page
mrsa_gen Man page
mul_filter Source code
mul_otu_long Source code
my_bin Source code
my_clr Source code
my_ra Source code
name.split Source code
nb_agg_categ Source code
nb_agg_ccint Source code
nb_agg_qcint Source code
nb_agg_qqint Source code
nb_agg_quant Source code
nb_bars Man page Source code
nb_bars_categ Source code
nb_bars_ccint Source code
nb_bars_qcint Source code
nb_bars_qqint Source code
nb_bars_quant Source code
nb_mods Man page Source code
nb_type Source code
null.mod.chisq Source code
otu_filter Man page Source code
pca_3d Man page Source code
phy_fun Source code
phyl_ord Source code
prev_filter Source code
pull_lev Man page Source code
qcint_bars Source code
qcint_est Source code
qqint_bars Source code
qqint_est Source code
quant_bars Source code
quant_cont Source code
ra_bar_grp Source code
ra_bar_no_grp Source code
ra_bars Man page Source code
ra_filter Source code
shannonE Source code
shannonH Source code
simpsonD Source code
simpsonE Source code
sobs Source code
sum_fun Source code
sym Man page
syms Man page
taxa_boxplot Man page Source code
taxa_summarize Source code
taxa_summary Man page Source code
three_mode Man page Source code
tidy_micro Man page Source code
tidyeval Man page
wilcox_rank_sum_mod Source code
wilcox_rank_sum_no_mod Source code
CharlieCarpenter/tidyMicro documentation built on April 25, 2021, 4:09 p.m.

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