mrsa_clin: A data set containing the clinical data of the subjects...
In CharlieCarpenter/tidyMicro: A Pipeline for Microbiome Analysis and Visualization

Description Usage Format Source

Data from a study to define the nasal microbiome of hospital inpatients who are persistently colonized with methicillin-resistant Staphylococcus aureus (MRSA) compared with matched, non-colonized controls. See original paper for matching proceedure.

mrsa_clin

A 52x15 data.frame

Lib: A character vector of sequencing library names
Subject: Subject names
Age: Subject's Ages in years
Antibiotics: Whether or not subjects were on some form of antibiotics. 'N' = No, 'Y' = Yes
Aureus_Positve: Whether or not subjects were positive for S.Aureus (methicillin-sensitive or methicillin-resistent)
Case_or_Control: Whether or not the subject was MRSA positive (methicillin-resistent S.Aureus positive). 'Case' = MRSA positive
Decade: Subjects age in decades. '8' means the subject was in their 80s
Diabetes: Whether or not the subject had diabets. 'N' = No, 'Y' = Yes
Match: Numeric variable indicating matched subjects. See original paper for full matching procedure.
MRSA_Postive: Whether or not the subject was MRSA positive. 'Y' = MRSA positive
Nasal_Steroids: Whether or not the subject was using nasal steroids. 'N' = No, 'Y' = Yes
Nursing_Home: Whether or not the subject was staying in a nursing home. 'N' = No, 'Y' = Yes
Sex: Subject sex. All male as subjects were matched on sex
Smoking: Subject's smoking status. 'F' = Former, 'N' = Never, 'Y' = Yes/current smoker