Man pages for Chris-Cherry/domino
Receptor Ligand Analysis for Single Cell RNA Seq
| add_rl_column | Adds a column to the RL signaling data frame. |
| build_domino | Calculate a signaling network for a domino object |
| collate_network_items | Extracts all features, receptors, or ligands present in a... |
| convert_genes | Use biomaRt to convert genes |
| cor_heatmap | Create a heatmap of correlation between receptors and... |
| cor_scatter | Create a correlation plot between transcription factor... |
| create_domino | Create a domino object and prepare it for network... |
| domino-class | The domino Class |
| do_norm | Normalize a matrix to its max value by row or column |
| feat_heatmap | Create a heatmap of features organized by cluster |
| gene_network | Creates a gene association network |
| ggplot_col_gen | Generate ggplot colors |
| incoming_signaling_heatmap | Create a cluster incoming signaling heatmap |
| lc | Pulls all items from a list pooled into a single vector |
| rename_clusters | Renames clusters in a domino object |
| signaling_heatmap | Create a network heatmap |
| signaling_network | Create a cluster to cluster signaling network diagram |
