rename_clusters: Renames clusters in a domino object
In Chris-Cherry/domino: Receptor Ligand Analysis for Single Cell RNA Seq
View source: R/convenience_fxns.R
rename_clusters R Documentation
Renames clusters in a domino object
Description
This function reads in a receptor ligand signaling database, cell level
features of some kind (ie. output from pySCENIC), z-scored single cell data,
and cluster id for single cell data, calculates a correlation matrix between
receptors and other features (this is transcription factor module scores if
using pySCENIC), and finds features enriched by cluster. It will return a
domino object prepared for build_domino, which will calculate a signaling
network.
Usage
rename_clusters(dom, clust_conv)
Arguments
dom
A domino object to rename clusters in
clust_conv
A named vector of conversions from old to new clusters. Values are taken as new clusters IDs and names as old cluster IDs.
Value
A domino object with clusters renamed in all applicable slots.
Chris-Cherry/domino documentation built on Dec. 9, 2024, 12:28 a.m.
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View source: R/convenience_fxns.R
| rename_clusters | R Documentation |
Renames clusters in a domino object
Description
This function reads in a receptor ligand signaling database, cell level features of some kind (ie. output from pySCENIC), z-scored single cell data, and cluster id for single cell data, calculates a correlation matrix between receptors and other features (this is transcription factor module scores if using pySCENIC), and finds features enriched by cluster. It will return a domino object prepared for build_domino, which will calculate a signaling network.
Usage
rename_clusters(dom, clust_conv)
Arguments
dom |
A domino object to rename clusters in |
clust_conv |
A named vector of conversions from old to new clusters. Values are taken as new clusters IDs and names as old cluster IDs. |
Value
A domino object with clusters renamed in all applicable slots.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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