signaling_heatmap: Create a network heatmap
In Chris-Cherry/domino: Receptor Ligand Analysis for Single Cell RNA Seq

signaling_heatmap

R Documentation

Create a network heatmap

Creates a heatmap of the signaling network. Alternatively, the network matrix can be accessed directly in the signaling slot of a domino object.

signaling_heatmap(
  dom,
  clusts = NULL,
  min_thresh = -Inf,
  max_thresh = Inf,
  scale = "none",
  normalize = "none",
  ...
)

`dom`	A domino object with network built (build_domino)
`clusts`	A vector of clusters to be included. If NULL then all clusters are used.
`min_thresh`	Minimum signaling threshold for plotting. Defaults to -Inf for no threshold.
`max_thresh`	Maximum signaling threshold for plotting. Defaults to Inf for no threshold.
`scale`	How to scale the values (after thresholding). Options are 'none', 'sqrt' for square root, or 'log' for log10.
`normalize`	Options to normalize the matrix. Normalization is done after thresholding and scaling. Accepted inputs are 'none' for no normalization, 'rec_norm' to normalize to the maximum value with each receptor cluster, or 'lig_norm' to normalize to the maximum value within each ligand cluster
`...`	Other parameters to pass to NMF::aheatmap