collate_network_items: Extracts all features, receptors, or ligands present in a...

In Chris-Cherry/domino: Receptor Ligand Analysis for Single Cell RNA Seq

Extracts all features, receptors, or ligands present in a signaling network.

Description

This function collates all of the features, receptors, or ligands found in a signaling network anywhere in a list of clusters. This can be useful for comparing signaling networks across two separate conditions. In order to run this build_domino must be run on the object previously.

Usage

collate_network_items(dom, clusters = NULL, return = NULL)

Arguments

dom	A domino object containing a signaling network (i.e. build_domino run)
clusters	A vector indicating clusters to collate network items from. If left as NULL then all clusters will be included.
return	A string indicating where to collate 'features', 'receptors', or 'ligands'. If 'all' then a list of all three will be returned.

Value

A vector containing all features, receptors, or ligands in the data set or a list containing all three.

Chris-Cherry/domino documentation built on Dec. 9, 2024, 12:28 a.m.