make_de_plots: Runs differential expression and creates relevant plots for a...

Description Usage Arguments Value

View source: R/make_de_plots.R

Description

Runs differential expression and creates relevant plots for a ser object

Usage

1
2
3
4
5
6
7
8
9
make_de_plots(
  ser = NULL,
  list_ser = NULL,
  feats = NULL,
  out_dir = "2_de/",
  cols = NULL,
  feature_plots = TRUE,
  meta = NULL
)

Arguments

ser

The Seurat object to use

list_ser

List of DE seurat object

feats

A subset of featurs to run DE (I.E. only surface markers) If NULL then will run on all genes

out_dir

Directory to write plots and save markers.

cols

Name vector of colors by cluster

feature_plots

Whether or not to include feature plots in the pdf output.

meta

subset that you want to graph

Value

Creates plots in user inputted directory


Chris-Cherry/sctools documentation built on Jan. 25, 2022, 2:19 p.m.