make_de_plots: Runs differential expression and creates relevant plots for a...
In Chris-Cherry/sctools: Single cell analysis tools package

Runs differential expression and creates relevant plots for a ser object

make_de_plots(
  ser = NULL,
  list_ser = NULL,
  feats = NULL,
  out_dir = "2_de/",
  cols = NULL,
  feature_plots = TRUE,
  meta = NULL
)

`ser`	The Seurat object to use
`list_ser`	List of DE seurat object
`feats`	A subset of featurs to run DE (I.E. only surface markers) If NULL then will run on all genes
`out_dir`	Directory to write plots and save markers.
`cols`	Name vector of colors by cluster
`feature_plots`	Whether or not to include feature plots in the pdf output.
`meta`	subset that you want to graph