ref_ser_process: Processes counts into a Seurat object prepared for alignment...
In Chris-Cherry/sctools: Single cell analysis tools package
Description
Usage
Arguments
Value
View source: R/ref_ser_process.R
Description
Reads in a blank ser object (usually from align_sers.R) and processes
with a traditional Seurat pipeline. All scaling will be performed using
metadata from the reference Seurat object
Usage
1
ref_ser_process(ser, res = 0.8, ref_ser = NULL)
Arguments
ser
Seurat object to process.
res
Resolution for clustering
ref_ser
A processed reference Seurat object used to obtain metadata
for scaling and cell selection.
Value
Outputs a processed Seurat outputs (PCA, UMAP, Phate)
Chris-Cherry/sctools documentation built on Jan. 25, 2022, 2:19 p.m.
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Description Usage Arguments Value
View source: R/ref_ser_process.R
Description
Reads in a blank ser object (usually from align_sers.R) and processes with a traditional Seurat pipeline. All scaling will be performed using metadata from the reference Seurat object
Usage
1 | ref_ser_process(ser, res = 0.8, ref_ser = NULL)
|
Arguments
ser |
Seurat object to process. |
res |
Resolution for clustering |
ref_ser |
A processed reference Seurat object used to obtain metadata for scaling and cell selection. |
Value
Outputs a processed Seurat outputs (PCA, UMAP, Phate)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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