pseudotime_plot3d: Generate flashing and spinning 3d pseudotime plots
In Chris-Cherry/sctools: Single cell analysis tools package
Description
Usage
Arguments
Value
View source: R/pseudotime_plot3d.R
Description
Generate flashing and spinning 3d pseudotime plots
Usage
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pseudotime_plot3d(
ser,
curve_dir,
pseudotime_dir,
subset = NULL,
out_dir = "5_pseudotime_3d",
bg_color = "white",
frame = 500
)
Arguments
ser
Seurat object to process
curve_dir
Input curve directory
pseudotime_dir
Input pseudotime directory
subset
A subset of clusters that user want to see
out_dir
Output directory
bg_color
Background color
frame
Number of frames
Value
Makes png files that can be assembled into 3d moving plots
Chris-Cherry/sctools documentation built on Jan. 25, 2022, 2:19 p.m.
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Description Usage Arguments Value
View source: R/pseudotime_plot3d.R
Description
Generate flashing and spinning 3d pseudotime plots
Usage
1 2 3 4 5 6 7 8 9 | pseudotime_plot3d(
ser,
curve_dir,
pseudotime_dir,
subset = NULL,
out_dir = "5_pseudotime_3d",
bg_color = "white",
frame = 500
)
|
Arguments
ser |
Seurat object to process |
curve_dir |
Input curve directory |
pseudotime_dir |
Input pseudotime directory |
subset |
A subset of clusters that user want to see |
out_dir |
Output directory |
bg_color |
Background color |
frame |
Number of frames |
Value
Makes png files that can be assembled into 3d moving plots
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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