signed_set_scoring: Scores cell expression of genes in set taking into account...
In Chris-Cherry/sctools: Single cell analysis tools package

Takes in a gene set and uses normalized scaled gene expression data to calculate a score describing extent to which cells are expressing genes in the set. Seurat object must contain scale_data assay. Gene set must be organized such that "genes" are genes and "FC" is (log)foldchange. All genes will be assumed to be significant.

signed_set_scoring(
  ser,
  geneset,
  from_gene = "MGI",
  to_gene = "MGI",
  scaled = TRUE
)

`ser`	A Seurat object to be scored by the gene set. Must contain scaled data
`geneset`	A list of genes and their fold changes.
`from_gene`	Original gene type
`to_gene`	Gene type for conversion
`scaled`	Boolean to determine whether to scale score by the number of genes in the set