Description Usage Arguments Value Examples
Posterior multivariate pairs plot for Poisson log-normal mixed model
1 | plot_pairs(obj, marker1, marker2, marker3)
|
obj |
Object of class |
marker1 |
Name of first marker |
marker2 |
Name of second marker |
marker3 |
Name of third marker |
ggplot2
object
1 2 3 4 5 6 7 8 9 10 11 | set.seed(1)
df = simulate_data(n_cells = 10)
str(df)
fit = poisson_lognormal(df,
protein_names = names(df)[3:ncol(df)],
condition = "condition",
group = "donor",
r_donor = 2,
warmup = 200, iter = 325, adapt_delta = 0.95,
num_chains = 1)
plot_pairs(fit, "m01", "m02", "m03")
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