API for Close-your-eyes/igsc
Immunoglobolin sequences from scRNAseq
| Global functions | |
|---|---|
| .col.letter.fun | Source code |
| .get_pos_line | Source code |
| .get_symbols | Source code |
| .integer_breaks | Source code |
| .match_imgt_str | Source code |
| .vdjdb_tcrs_match_fun | Source code |
| MultiplePairwiseAlignmentsToOneSubject | Man page Source code |
| XStringSet_to_df | Source code |
| add_1_between_consecutive_letters | Source code |
| algnmt_plot | Man page Source code |
| align_imgt_ref_to_TCR_seq | Man page Source code |
| any_false | Source code Source code |
| attach_imgt_alleles | Man page Source code |
| check_for_indel_induction | Source code |
| check_for_invalid_chars | Source code |
| check_for_overlapping_indels | Source code |
| check_ref_seq_for_matches | Man page Source code |
| cigar_to_position | Man page Source code |
| coalesce_join | Source code |
| collapse_duplicate_sequences | Man page Source code |
| compare_seq_df_long | Man page Source code |
| compare_seq_previous | Source code |
| compare_seqs | Source code |
| consecutive_distinct_seq | Man page |
| find_consecutive_sequences | Source code |
| find_consecutive_sequences2 | Source code |
| fix_lines | Source code |
| fix_lines2 | Source code |
| fix_translation_lines | Source code |
| get_features | Source code |
| get_header | Source code |
| get_origin | Source code |
| get_seqs_from_feature_df | Man page Source code |
| global_align | Man page Source code |
| guess_type | Source code |
| imgt_tcr_segment_prep | Man page Source code |
| join_chunkwise | Source code |
| make_pa_unique_and_order_and_rm_subset_alignments | Source code |
| pa_to_df | Source code |
| paste_patterns_to_subject | Source code |
| paste_subject_seq | Source code |
| pick_randomNames | Man page Source code |
| prep_df_for_algnmt_plot | Source code |
| prep_list | Source code |
| prep_subject_and_patterns | Source code |
| printPairwiseAlignment | Man page Source code |
| rcsv | Source code |
| read_cellranger_outs | Man page Source code |
| read_cellranger_outs2 | Man page Source code |
| read_fasta | Man page Source code |
| rfasta | Source code |
| seq2 | Source code |
| shifted_pos | Source code |
| vdjdb_hits | Man page Source code |
| webscrape_ncbi | Man page Source code |
| write_fasta | Man page Source code |
