consecutive_distinct_seq: Get the longest consecutive stretch of distinct sequence
In Close-your-eyes/igsc: Immunoglobolin sequences from scRNAseq
consecutive_distinct_seq R Documentation
Get the longest consecutive stretch of distinct sequence
Description
Use case: Have a consensus sequence calculated from a set of DNA or AA sequences. Then
get the longest consecutive stretch of distinct sequence from the consensus.
Usage
consecutive_distinct_seq(seq, seq_type = NULL)
Arguments
seq
Sequence as character, DNAStringSet, DNAString, RNAStringSet, RNAString,
AAStringSet or AAString
seq_type
set sequence type to AA or NT if necessary; if NULL
it is attempted to guess the type
Value
a character sequence
Close-your-eyes/igsc documentation built on Jan. 28, 2024, 10:28 p.m.
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| consecutive_distinct_seq | R Documentation |
Get the longest consecutive stretch of distinct sequence
Description
Use case: Have a consensus sequence calculated from a set of DNA or AA sequences. Then get the longest consecutive stretch of distinct sequence from the consensus.
Usage
consecutive_distinct_seq(seq, seq_type = NULL)
Arguments
seq |
Sequence as character, DNAStringSet, DNAString, RNAStringSet, RNAString, AAStringSet or AAString |
seq_type |
set sequence type to AA or NT if necessary; if NULL it is attempted to guess the type |
Value
a character sequence
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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