check_ref_seq_for_matches: Check a vector of sequences for equality on each position

In Close-your-eyes/igsc: Immunoglobolin sequences from scRNAseq

Check a vector of sequences for equality on each position

Description

A vector of sequences is compared to a reference sequence. In case of equality all sequences except for ref_seq are changed to 'match' or in case of inequality to 'mismatch'.

Usage

check_ref_seq_for_matches(
  seq_set,
  ref_seq_name = NULL,
  pos_col = "position",
  seq_col = "seq",
  name_col = "seq.name"
)

Arguments

seq_set	XStringSet or character vector of sequences
ref_seq_name	name of reference sequence which will not be altered
pos_col	name of position column
seq_col	name of sequence column
name_col	name of column which holds sequence names

Value

data frame

Close-your-eyes/igsc documentation built on Jan. 28, 2024, 10:28 p.m.