read_fasta: Read sequences from a fasta-formatted file

In Close-your-eyes/igsc: Immunoglobolin sequences from scRNAseq

Read sequences from a fasta-formatted file

Description

vroom::vroom_lines is used to quickly read lines of a text file (as a fasta file is one).

Usage

read_fasta(file, rm_comments = T, comment_indicator = c(";", "#"))

Arguments

file	path to a file with fasta-formatted sequences
rm_comments	logical whether to remove comment lines
comment_indicator	first characters of a line which indicate a comment

Value

a named character vector of sequences in file

Examples

## Not run: 
seqs <- igsc::read_fasta(file = "my/fasta/file.fasta")

## End(Not run)

Close-your-eyes/igsc documentation built on Jan. 28, 2024, 10:28 p.m.