extract_CPGs: Extracts all CpGs from a genome

In CompEpigen/methrix: Fast and efficient summarization of generic bedGraph files from Bisufite sequencing

Extracts all CpGs from a genome

Description

Extracts all CpGs from a genome

Usage

extract_CPGs(ref_genome = NULL)

Arguments

ref_genome

BSgenome object or name of the installed BSgenome package. Example: BSgenome.Hsapiens.UCSC.hg19

Value

a list of data.table containing number of CpG's and contig lengths

Examples

## Not run: 
hg19_cpgs = methrix::extract_CPGs(ref_genome = 'BSgenome.Hsapiens.UCSC.hg19')

## End(Not run)

CompEpigen/methrix documentation built on July 24, 2024, 5:49 p.m.