plot_violin: Violin Plot for beta-Values

View source: R/methrix_plot.R

plot_violinR Documentation

Violin Plot for \beta-Values

Description

Violin Plot for \beta-Values

Usage

plot_violin(
  m,
  ranges = NULL,
  n_cpgs = 25000,
  pheno = NULL,
  col_palette = "RdYlGn"
)

Arguments

m

Input methrix object

ranges

genomic regions to be summarized. Could be a data.table with 3 columns (chr, start, end) or a GenomicRanges object

n_cpgs

Use these many random CpGs for plotting. Default 25000. Set it to NULL to use all - which can be memory expensive.

pheno

Column name of colData(m). Will be used as a factor to color different groups in the violin plot.

col_palette

Name of the RColorBrewer palette to use for plotting.

Value

ggplot2 object

Examples

data('methrix_data')
plot_violin(m = methrix_data)

CompEpigen/methrix documentation built on July 24, 2024, 5:49 p.m.