plot_coverage: Coverage QC Plots

View source: R/methrix_plot.R

plot_coverageR Documentation

Coverage QC Plots

Description

Coverage QC Plots

Usage

plot_coverage(
  m,
  type = c("hist", "dens"),
  pheno = NULL,
  perGroup = FALSE,
  lim = 100,
  size.lim = 1e+06,
  col_palette = "RdYlGn"
)

Arguments

m

Input methrix object

type

Choose between 'hist' (histogram) or 'dens' (density plot).

pheno

Column name of colData(m). Will be used as a factor to color different groups in the plot.

perGroup

Color the plots in a sample-wise manner?

lim

Maximum coverage value to be plotted.

size.lim

The maximum number of observarions (sites*samples) to use. If the dataset is larger that this, random sites will be selected from the genome.

col_palette

Name of the RColorBrewer palette to use for plotting.

Value

ggplot2 object

Examples

data('methrix_data')
plot_coverage(m = methrix_data)

CompEpigen/methrix documentation built on July 24, 2024, 5:49 p.m.