GenomicInteractions | R Documentation |
Create GenomicInteractions objects from two GRanges ojects.
GenomicInteractions(anchor1, anchor2, counts, ...) ## S4 method for signature 'GRanges,GRanges,numeric' GenomicInteractions(anchor1, anchor2, counts, ...) ## S4 method for signature 'GInteractions,ANY,ANY' GenomicInteractions(anchor1) ## S4 method for signature 'GInteractions,numeric,ANY' GenomicInteractions(anchor1, anchor2) ## S4 method for signature 'numeric,numeric,GRanges' GenomicInteractions(anchor1, anchor2, counts, ...) ## S4 method for signature 'GRanges,GRanges,GenomicRanges_OR_missing' GenomicInteractions(anchor1, anchor2, counts, ...) ## S4 method for signature 'missing,missing,GenomicRanges_OR_missing' GenomicInteractions(anchor1, anchor2, counts, ...) ## S4 method for signature 'ANY,ANY,ANY' GenomicInteractions(anchor1, anchor2, counts, ...)
anchor1, anchor2 |
GRanges objects. |
counts |
An integer vector, defaults to 1. |
... |
Additional data to be added to mcols |
a GenomicInteractions object
library(GenomicRanges) anchor.one = GRanges(c('chr1', 'chr1', 'chr1', 'chr1'), IRanges(c(10, 20, 30, 20), width=5)) anchor.two = GRanges(c('chr1', 'chr1', 'chr1', 'chr2'), IRanges(c(100, 200, 300, 50), width=5)) interaction_counts = sample(1:10, 4) test <- GenomicInteractions(anchor.one, anchor.two, counts=interaction_counts)
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