export.bed12 | R Documentation |
Export interactions in BED12 format.
export.bed12(GIObject, fn = NULL, score = "counts") ## S4 method for signature 'GInteractions' export.bed12(GIObject, fn = NULL, score = "counts")
GIObject |
A GInteractions object. |
fn |
A filename to write the object to |
score |
Which metadata column to export as score Exports a GInteractions object to BED12 format, and writes to a specified file. If filename is not specified, then a data.frame containing the information is returned. Bed12 files provide a method for visualising interactions, it is not a good format for storing all of the data associated with an interaction dataset, particularly for trans-chromosomal interactions, which can only be stored in the bed12 names field. |
invisible(1) if outputting to file or a data.frame containing all of the corresponding information
data(hic_example_data) export.bed12(hic_example_data, fn = tempfile(), score = 'counts')
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