| .exportName |
Source code
|
| .getNames |
Source code
|
| .getScore |
Source code
|
| .get_gr_names |
Source code
|
| .importHicLib |
Man page
Source code
|
| .importHomer |
Man page
Source code
|
| .isEqualSeqInfo |
Source code
|
| .makeRelativeVP |
Source code
|
| .process.chr |
Source code
|
| .processChiapetName |
Man page
Source code
|
| .readBam |
Man page
Source code
|
| .readTwoBams |
Man page
Source code
|
| .validateInput |
Man page
Source code
|
| GenomicInteractions |
Man page
|
| GenomicInteractions,ANY,ANY,ANY-method |
Man page
|
| GenomicInteractions,GInteractions,ANY,ANY-method |
Man page
|
| GenomicInteractions,GInteractions,numeric,ANY-method |
Man page
|
| GenomicInteractions,GRanges,GRanges,GenomicRanges_OR_missing-met |
Man page
|
| GenomicInteractions,GRanges,GRanges,numeric-method |
Man page
|
| GenomicInteractions,missing,missing,GenomicRanges_OR_missing-met |
Man page
|
| GenomicInteractions,numeric,numeric,GRanges-method |
Man page
|
| GenomicInteractions-class |
Man page
|
| GenomicInteractions-package |
Man page
|
| InteractionHelpers |
Man page
|
| InteractionTrack |
Man page
Source code
|
| InteractionTrack-class |
Man page
|
| anchorOne |
Man page
|
| anchorOne,GInteractions-method |
Man page
|
| anchorTwo |
Man page
|
| anchorTwo,GInteractions-method |
Man page
|
| annotateInteractions |
Man page
|
| annotateInteractions,GInteractions,list-method |
Man page
|
| annotateRegions |
Man page
|
| annotateRegions,GInteractions,character,vector-method |
Man page
|
| annotationFeatures |
Man page
|
| annotationFeatures,GInteractions-method |
Man page
|
| asBED,GInteractions-method |
Man page
|
| availableDisplayPars |
Man page
Source code
|
| calculateDistances |
Man page
|
| calculateDistances,GInteractions-method |
Man page
|
| capitalize |
Source code
|
| categoriseInteractions |
Man page
Source code
|
| chromosome,InteractionTrack-method |
Man page
|
| countsBetweenAnchors |
Man page
|
| countsBetweenAnchors,GInteractions,GRanges-method |
Man page
|
| description,GInteractions-method |
Man page
|
| description<-,GInteractions,ANY-method |
Man page
|
| end,InteractionTrack-method |
Man page
|
| export.bed12 |
Man page
|
| export.bed12,GInteractions-method |
Man page
|
| export.bedpe |
Man page
|
| export.bedpe,GInteractions-method |
Man page
|
| export.chiasig |
Man page
|
| export.chiasig,GInteractions-method |
Man page
|
| export.igraph |
Man page
|
| export.igraph,GInteractions-method |
Man page
|
| get_binom_ligation_threshold |
Man page
Source code
|
| get_self_ligation_threshold |
Man page
Source code
|
| getters |
Man page
|
| hg19.refseq.transcripts |
Man page
|
| hic_example_data |
Man page
|
| interactionCounts |
Man page
|
| interactionCounts,GInteractions-method |
Man page
|
| interactionCounts<- |
Man page
|
| interactionCounts<-,GInteractions-method |
Man page
|
| is.cis |
Man page
|
| is.cis,GInteractions-method |
Man page
|
| is.dd |
Man page
|
| is.dd,GInteractions-method |
Man page
|
| is.dt |
Man page
|
| is.dt,GInteractions-method |
Man page
|
| is.pd |
Man page
|
| is.pd,GInteractions-method |
Man page
|
| is.pp |
Man page
|
| is.pp,GInteractions-method |
Man page
|
| is.pt |
Man page
|
| is.pt,GInteractions-method |
Man page
|
| is.trans |
Man page
|
| is.trans,GInteractions-method |
Man page
|
| is.tt |
Man page
|
| is.tt,GInteractions-method |
Man page
|
| isInteractionType |
Man page
|
| isInteractionType,GInteractions-method |
Man page
|
| makeGenomicInteractionsFromFile |
Man page
Source code
|
| mm9_refseq_promoters |
Man page
|
| name |
Man page
|
| name,GInteractions-method |
Man page
|
| name<- |
Man page
|
| name<-,GInteractions-method |
Man page
|
| plotAvgViewpoint |
Man page
Source code
|
| plotCisTrans |
Man page
Source code
|
| plotCounts |
Man page
Source code
|
| plotDists |
Man page
Source code
|
| plotInteractionAnnotations |
Man page
Source code
|
| plotSummaryStats |
Man page
Source code
|
| plotViewpoint |
Man page
Source code
|
| removeDups |
Man page
Source code
|
| resetAnnotations |
Man page
|
| resetAnnotations,GInteractions-method |
Man page
|
| sameStrand |
Man page
Source code
|
| setters |
Man page
|
| start,InteractionTrack-method |
Man page
|
| subset,InteractionTrack-method |
Man page
|
| subsetByFeatures |
Man page
|
| subsetByFeatures,GInteractions,GRanges,missing-method |
Man page
|
| subsetByFeatures,GInteractions,GRangesList,missing-method |
Man page
|
| subsetByFeatures,GInteractions,character,character-method |
Man page
|
| sum,GInteractions-method |
Man page
|
| summariseByFeaturePairs |
Man page
|
| summariseByFeaturePairs,GInteractions-method |
Man page
|
| summariseByFeatures |
Man page
|
| summariseByFeatures,GInteractions-method |
Man page
|
| thymus_enh |
Man page
|
| updateObject,GenomicInteractions-method |
Man page
|
| viewPoint |
Man page
Source code
|
