Clustering-class: The Clustering Class

In Core-Bioinformatics/ClustAssess: Tools for Assessing Clustering

The Clustering Class

Description

A class containing relevant data for comparing clusterings, including the affinity matrix for the Clustering.

Slots

names

A character vector of element names; will be 1:n_elements if no names were available when creating the Clustering object.

n_elements

A numeric giving the number of elements.

is_hierarchical

A logical indicating whether the clustering is hierarchical or flat.

is_disjoint

A logical indicating whether the clustering is disjoint or overlapping.

alpha

A numeric giving the personalized PageRank damping factor; 1 - alpha is the restart probability for the PPR random walk.

r

A numeric hierarchical scaling parameter.

elm2clu_dict

A list giving the clusters each element is a member of.

clu2elm_dict

A list giving the element members of each cluster.

affinity_matrix

A Matrix containing the personalized pagerank equilibrium distribution.

Core-Bioinformatics/ClustAssess documentation built on Dec. 19, 2024, 8:19 p.m.