get_clusters_from_clustassess_object: Extract config-specific clusters from a ClustAssess object

In Core-Bioinformatics/ClustAssess: Tools for Assessing Clustering

Extract config-specific clusters from a ClustAssess object

Description

Given the output of the automatic_stability_assessment function, extract the clusters that are specific to a particular configuration of feature type, feature size, clustering method and, optionally, the number of clusters.

Usage

get_clusters_from_clustassess_object(
  clustassess_object,
  feature_type = NULL,
  feature_size = NULL,
  clustering_method = NULL,
  nclusters = NULL
)

Arguments

clustassess_object	Output of the automatic_stability_assessment.
feature_type	Type of feature used for dimensionality reduction. If NULL, it will select the first available feature.
feature_size	Size of the feature set used for clustering. If NULL, it will select the first available feature size.
clustering_method	Clustering method used. If NULL, it will select the first available clustering method.
nclusters	Number of clusters to extract. If NULL, all clusters are returned.

Value

A list of clusters that are specific to the given configuration. Each number of cluster will contain the list of partitions with that specific k and the ECC value indicating the overall stability of k.

Core-Bioinformatics/ClustAssess documentation built on Dec. 19, 2024, 8:19 p.m.