Man pages for CostaLab/scMarkerDetect
Detect marker panel from scRNA-seq profile
| Detect_single_marker | Detect single markers of specific cell groups |
| Detect_single_marker_all | Detect single markers of all cell groups |
| firstup | Firstup character |
| generate_report | generate html report for single markers of all cell groups |
| generate_report_rmd | generate html report for single markers of all cell groups |
| get_antibody | Get Antibody information table |
| get_gene_score | Calculate gene specific score in both direction |
| get_gene_score_neg | Calculate gene negative specific score |
| get_gene_score_neg.fbeta | Calculate gene positive specific score with FBeta (Hypergate... |
| get_gene_score_pos | Calculate gene positive specific score |
| get_gene_score_pos.fbeta | Calculate gene positive specific score with FBeta (Hypergate... |
| get_original_alpha | Calculate gene negative specific score |
| get_split_pos_pos | UmapPlot based on results from Markers Greedy Search |
| intersect.ignorecase | Intersect 2 list ignoring the cases and return the elements... |
| makeid | make id for plotting |
| normalize | Min-Max Normalization |
| plot_filter_stepbystep_first2 | Detect greedy step by step filters for cell group... |
| plot_ridge | RidgePlot of selected genes, with split value |
